ImageJ manages this process in a relatively transparent fashion. ℹ️About GitHub Wiki SEE, a search engine enabler for GitHub WikisĪs GitHub blocks most GitHub Wikis from search engines.Whether you like it or not, managing computer memory is an important part of all scientific image processing tasks. If after following this guide you're still having issues, please get in touch on our forum. The same applies to your user folder, since temporary files may be stored there. Take care to make sure that these aren't present in the path you installed the program to. Images/RegionSettings2.png Remove non-English characters from names.ĬellProfiler can also have trouble with non-standard characters in names, such as non-English or accented characters. In the resulting Region Settings box, ensure that a variant of English is selected as the system locale, and also make sure that "Use Unicode UTF-8 for worldwide language support" is disabled. In the Region window, select the Administrative tab and click Change System Locale. Open up Control Panel and enter Region settings. Both can be achieved by following these steps: Windows 10 recently added a beta version of Unicode support for unsupported programs, this does not work with CellProfiler! You may also want to try setting your system locale to English. Are your Windows language settings compatible?Įven in English Windows versions, the current release of CellProfiler has trouble with some Unicode characters. If it doesn't, proceed to the next section. In the top, User Variables section, check if CP_JAVA_HOME exists, and if so whether it's pointing to the correct directory where you installed CellProfiler. The resulting Environment Variables window displays several names associated with different directories. Click on the Advanced tab and click the Environment Variables button. This will bring up the System Properties window. From there, open up Advanced System Settings. You'll want to open up Control Panel and navigate to System. If that variable is not set CellProfiler won't be able to start. This is usually C:\Program Files (x86)\CellProfiler\java. You'll be looking for an Environment Variable called CP_JAVA_HOME, which should be pointing to the Java directory in your CellProfiler installation folder. Sometimes there's a problem during the installation process which prevents this Java platform being registered. Has Windows been told where CellProfiler's Java is?ĬellProfiler comes with it's own Java language interpreter bundled inside it. To correct this there are a number of settings we need to check. This is usually caused by CellProfiler having issues detecting it's Java environment. The message which appears is hard to catch, but should be as follows: When running the program you should see a black console window, which flashes a message very quickly before closing, then nothing else happens. CellProfiler Won't OpenĪfter you've installed CellProfiler you may find that it doesn't start. Please check out the image.sc forum or our Github issues (and submit new issues as needed) if these instructions fail to work for you. Instructions for CellProfiler 4.0 installation can be found here. The instructions below apply to CellProfiler 3.1.9 and earlier versions.
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